A: there's a lot of work to do
B: yeah, but we'll manage
If B were to say "yeah, but we'll handle". It sounds a little strange. I would say instead "yeah, but we'll be able to handle it", or even "yeah, but we'll handle it".
Another example: a rope can handle a certain amount of weight, but it can't manage a certain amount of weight.
Although I can't give you a definitive answer on how to use these two words, I hope this helped a bit and that someone else can give you more insight on this.