In what context?
I told her to arrive at 9am. At that time we will discuss ...
You have 5 days left to make your decision. I hope that in that time you can do so.
<At> is a certain point in time, a destination, or other fixed point.
<In> is within, between, or inside something.
Therefore <at> would be a certain point in time. And <in> would be between two endpoints of time.