It depends what you mean by it.
If you mean physically, e.g. to avoid bullets or hitting your head on a doorframe:
You have to keep your head down
You have to duck
If you mean metaphorically, e.g. to avoid being noticed by your boss and asked to work overtime:
You have to keep your head down
You have to stay under the radar
There are many ways to say this in all honesty. It depends on the speaker's style