A little more context would help, but I'll give it a try.
I'm glad you are enjoying learning English. Yes, I am enjoying it, thank you. (You could leave the "thank you" off but natives wouldn't)
I'm glad your house didn't get swept away in the flood. Thank you, I am too or I am too, thank you.
I'm glad you managed to show up for class on time. (weak smile as a reply)
Hope this helps.