I agree with the other two members that 'Nothing malicious' isn't an expression that anyone uses.
I also agree with Luna that 'Nothing personal' means 'I had (or I'm having) to do something mean to you, but it's not because I don't like you'. We say this usually just before, or just after, a potentially upsetting comment, in an effort to soften its effect.
'No hard feelings' is usually said following an argument or difficult conversation, as a means of parting from the other person on reasonably amicable terms. It can also be a question. You might ask 'No hard feelings?' to someone at the end of a conversation, just to check that they are not feeling resentful to you.