I believe both express a simple past tense action and answer the question: "did she come?":
Answer 1: "Yes, she came."
Answer 2: "Yes, she did come."
in Answer 2, you may omit the verb 'come'. you may wonder why the verb 'come' is in the simple present form, it's that because it is preceded by the auxillary verb 'did' and the rule for this is that the 'main verb' should not change its form.
another example:
"They did eat lunch at school."
"He did live in America."
:)