Mutter
These are words usually said so no one can hear them, or so the intended person cannot hear. This could be used to say something bad about someone, but you don't want them to know what you have said.
Murmur
This is similar to a whisper. You can murmur something to your friend so nobody else can hear it.
Mumble
This is used to describe somebody saying something that nobody could understand. A child may mumble words if he is being scolded by his parents or teacher. Someone may also mumble words if they are drunk.