I believe you are referring to the high falling tone. The high falling tone is merging with the high level tone in modern Cantonese, so you can merge them for most words. However, there are specific words (especially sentence ending particles) like 先 (\sin\) and 添 (\tim\) where they clearly are falling. Haih mh haih, \sin\?
The main difference is the use of an "h" and diacritic marks with Yale vs. only using numbers with jyutping. And when Yale does use tone numbers instead of marks, the two systems match up.
The other minor differences can be easily learned in in a matter of minutes. So, I would go with whatever you find easier.