They essentially both mean 'what', but they are used beside different sounds.
Nani --> used with o and other vowels
Nan ---> used with d, t, n, and counters
Ex. Nani o suru?
Nan desu ka.
2009年4月27日
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nani is 'what' or 'what kind'. you can say 'nani?' by itself
nan is more of how much, how many
the above are basic rules but does not apply to every situation
2009年4月24日
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nani is "what?" nan is the short term for nani. (as far as i know lol.) ex. nandesuka? sometimes they talk fast and they omit some vowels.