The difference is more about ease of movement than speed. Both 'pick up' and 'scoop up' can be quick, but 'scoop' suggests a single continuous, fluid movement. 'Pick up' does not have this connotation of smoothness.
When you scoop, it's a smooth, swift curve - like dipping a scoop into a tub of soft ice-cream and bringing it out again in one single, streamlined action.
We use 'scoop' when we are literally using a scoop to pick something up, such as dog mess, but we also use it in a figurative sense.
For example, you might say 'Jack scooped up all the prizes at the award ceremony'. This suggests that he won them all without any effort. Or you might say, 'I'll scoop you up from the station on my way home', suggesting that it's a quick and easy job - I'll swing by the station, you can jump in the car and then I'll carry on home.
Does that make sense?